![]() ![]() Zotero: excellent free bibliographic management software, like Endnote. Pandoc: the standalone conversion engine used by the rmarkdown package, comes bundled inside rmarkdown package. Rmarkdown: versatile "literate programming" R package for weaving chunks of R code with formatted text (markdown), built into RStudio. RStudio: excellent free, cross-platform R integrated development environment for writing code and text. įilter(region_label != 'GLOBAL' & goal='Index') %>%įormat='pandoc', caption='Top 10 scoring regions.') In RStudio, File > New File > R Markdown. You can variously render different formats in RStudio and set options in the metadata header.Ĭheck out test.Rmd differences between commits as it gets built up: Equations maintain their latex format, so not prettily rendered like other formats. Great for tracking changes in Github (ie rendered differences) and figuring out who changed what when (ie blame). Since Github doesn't natively show HTML, you'll need to right-click on link, Save Link as. Works well with linking out to source of References via DOI and links within document. All you need is a web browser to view this. Microsoft Word doc for sharing with collaborators who can use Track Changes for providing feedback. ![]() Portable document format for pretty professional output. ![]() Rmd and rendering it in the following formats: Here's an example of using a single Rmarkdown file test. This is in the vein of generating truly reproducible research. We can create versioned (ie in Github), live (ie output directly from data with R), documents in various formats (ie pdf, html, docx) with formatting, figures, tables, equations and references.
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